Index

F

filter_gene() (in module spaTrack)

G

get_ot_matrix() (in module spaTrack)

get_ptime() (in module spaTrack) get_velocity() (in module spaTrack)

L

Lasso (class in spaTrack)

least_action() (in module spaTrack)

M

map_cell_to_LAP() (in module spaTrack)

O

order_trajectory_genes() (in module spaTrack)

P

plot_least_action_path() (in module spaTrack) plot_scatter() (spaTrack.Trainer method)

plot_trajectory_gene() (in module spaTrack) plot_trajectory_gene_heatmap() (in module spaTrack) ptime_gene_GAM() (in module spaTrack)

R

run() (spaTrack.Trainer method)

S

set_start_cells() (in module spaTrack)

T

Trainer (class in spaTrack)

V

VectorField() (in module spaTrack)

vi_plot() (spaTrack.Lasso method)